Oh ok. The problem is that through fixture editor you can only set the order for both leagues. When you set the order the fixtures also get messed up so this is what I did:
Played entirely computer generated season
Saved at the end of the season
Opened fixture editor and set the order as teams 1-6 div 1, 1-3 div 2, 7-9 div 1, 4-9 div 2.
Started a new season by opening the sav and pressing continue. With 3 promoted and 3 relegated the tables were right.
Here is the problem. I know that the fixtures for full season are as follows:
1-77 CC1
78-144 CC2
145-217 NL1
218-288 NL2
289-298 C&G
What I don't know is where the tables are generated for the NL. I can change the fixtures but I didn't know if there was a team list for the NL simular to the CC. If there is maybe Ajit could add it to fixtures editor.